{"id":69,"date":"2020-03-14T15:40:30","date_gmt":"2020-03-14T15:40:30","guid":{"rendered":"http:\/\/lab.raycui.com\/?page_id=69"},"modified":"2025-07-15T07:58:06","modified_gmt":"2025-07-15T07:58:06","slug":"publications","status":"publish","type":"page","link":"http:\/\/lab.raycui.com\/zh\/publications\/","title":{"rendered":"\u8bba\u8457"},"content":{"rendered":"

Google Scholar page.<\/a><\/p>\n

Reprints can be downloaded from my researchgate page at\u00a0https:\/\/www.researchgate.net\/profile\/Rongfeng_Cui\/contributions<\/a>.<\/p>\n

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  1. Z. Wang, D. Yao, B. Zhao, Y. Shao, F. Li, K-Y Ma, R. Cui*<\/strong>. Effective purging and conservation of heterozygous regions during independent evolution to high-level inbreeding in wild Paradise Fishes. 2025. Molecular Ecology.<\/li>\n
  2. R. Cui<\/strong>, J. Wu, K. Yan, S. Luo, Y. Hu, W. Feng, B. Lu, J. Wang. Phased genome assemblies reveal haplotype-specific genetic load in the critically endangered Chinese Bahaba (Teleostei, Sciaenidae). 2024. Molecular Ecology.<\/li>\n
  3. M. A. Khallaf, R. Cui<\/strong>, J. Wei\u00dfflog, M. Erdogmus, A. Svato\u0161, H. K. M. Dweck, D. R. Valenzano, B. Hansson, M. Knaden. Large-scale characterization of sex pheromone communication systems in Drosophila<\/em>. 2021. Nat. Comm.<\/li>\n
  4. R. Cui<\/strong>, A. M. Tyers, Z. J. Malubhoy, S. Wisotsky, S. Valdesalici, E. Henriette, S. L. Kosakovsky Pond, D. R. Valenzano. Ancestral transoceanic colonization and recent population reduction in a nonannual killifish from the Seychelles archipelago. 2021. Molecular Ecology.<\/li>\n
  5. Powell D. L., Payne C., Banerjee S. M., Keegan M., Bashkirova E., Cui, R.<\/strong>, . . . Schumer M. The genetic architecture of variation in the sexually selected sword ornament and its evolution in hybrid populations. 2021. Current Biology<\/em>, 31, 1-13.<\/li>\n
  6. D. Willemsen, R. Cui<\/strong>, M. Reichard, D.R. Valenzano. Intra-species differences in population size shape life history and genome evolution. 2020. eLife.<\/li>\n
  7. R. Cui<\/strong>, D. Willemsen, D.R. Valenzano. Nothobranchius furzeri<\/em> (African Turquoise Killifish). 2020. Trends Genet.<\/li>\n
  8. R. Cui<\/strong>, T. Medeiros, D. Willemsen, L. N. M. Iasi, G. E. Collier, M. Graef, M. Reichard, D.R. Valenzano. Relaxed selection limits lifespan by increasing mutation load. 2019<\/strong>. Cell..<\/li>\n
  9. M. Schumer, D. Powell, P. Delcl\u00f3s, M. Squire, R. Cui<\/strong>, P. Andolfatto, and G. Rosenthal. Assortative mating and persistent reproductive isolation in hybrids. 2017<\/strong>. PNAS : 201711238.<\/li>\n
  10. R. Cui*<\/strong>, P. Delclos*, M. Schumer, G. Rosenthal.\u00a0Early social learning triggers neurogenomic expression changes in a swordtail fish. 2017<\/strong>. Proc. R. Soc. B.\u00a0*equal contribution<\/strong><\/li>\n
  11. M. Schumer, R. Cui<\/strong>, D Powell, G. Rosenthal, P. Andolfatto. 2016<\/strong>. Ancient hybridization and genomic stabilization in a swordtail fish. Molecular Ecology<\/em>.<\/li>\n
  12. D.R. Valenzano, B. Benayoun, P.P. Singh, E. Zhang, P.D. Etter, C.K. Hu, M. ClementZiza, D. Willemsen, R. Cui<\/strong>, I. Harel, B. Machado, M.C. Yee, S.C. Sharp, C.D. Bustamante, A. Beyer, E.A. Johnson, A. Brunet. 2015<\/strong> . The African turquoise killifish genome provides insights into evolution and genetic\u00a0architecture of lifespan. Cell.<\/em><\/li>\n
  13. S. J. Ingley, M. R. Asl, C. Wu, R. Cui<\/strong>, M. Gadelhak, W. Li, J. Zhang, J. Simpson, C. Hash, T. Butkowski, T. Veen, J. B. Johnson, W. Yan, G. G. Rosenthal. anyFish 2.0: An open-source software platform to generate and share animated fish models to study behavior. 2015<\/strong>. SoftwareX.<\/li>\n
  14. R. Cui<\/strong>, M. Schumer, G.G. Rosenthal.\u00a0Admix\u2019em: A flexible framework for forward-time simulations of hybrid populations with selection and mate choice. 2015<\/strong>.\u00a0Bioinformatics<\/em><\/li>\n
  15. M. Schumer*, R. Cui*<\/strong>, G.G. Rosenthal and P. Andolfatto. 2015<\/strong>. simMSG: an experimental design tool for high-throughput genotyping of hybrids. \u00a0Molecular Ecology Resources<\/em>. *equal contribution<\/strong><\/li>\n
  16. M. Schumer, R. Cui<\/strong>, G.G. Rosenthal and P. Andolfatto. 2015<\/strong>. Reproductive isolation of hybrid populations driven by genetic incompatibilities.\u00a0PLoS Genetics<\/em> doi:10.1371\/journal.pgen.1005041. [PDF]<\/a><\/li>\n
  17. M. Schumer, R. Cui<\/strong>, D.L. Powell, R. Dresner, G.G. Rosenthal and P. Andolfatto , 2014<\/strong>. High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species.\u00a0eLife\u00a0<\/em>:10.7554\/eLife.02535. [PDF]<\/a><\/li>\n
  18. T. Veen, S.J. Ingley, R. Cui<\/strong>, J. Simpson, M.R. Asl, J. Zhang, T. Butkowski, W. Li, C. Hash, J. B. Johnson, W. Yan and G.G. Rosenthal , 2013<\/strong>. anyFish<\/em>: an open-source software to generate animated fish models for behavioural studies. Evolutionary Ecology Research<\/em> 15:361-375 [PDF]<\/a><\/li>\n
  19. R. Cui<\/strong>, Y. Pan, X. Yang and Y. Wang, 2013<\/strong>. A new barbeled goby from south China (Teleostei: Gobiidae). Zootaxa<\/em> 3670(2):177-192<\/li>\n
  20. R. Cui<\/strong>, M. Schumer, K. Kruesi, R. Walter, P. Andolfatto and G.G. Rosenthal, 2013<\/strong>. Phylogenomics reveals extensive reticulate evolution in Xiphophorus<\/em> fishes. Evolution<\/em>. DOI: 10.1111\/evo.12099[PDF]<\/a><\/li>\n
  21. M. Schumer, R. Cui<\/strong>, B. Boussau, R. Walter, G.G. Rosenthal and P. Andolfatto, 2012<\/strong>. An evaluation of the hybrid speciation hypothesis for Xiphophorus clemenciae<\/em> based on whole genome sequences. Evolution <\/em>. [PDF]<\/a><\/li>\n
  22. T. Butkowski, W. Yan, A.M. Gray, R. Cui<\/strong>, M.N. Verzijden and G.G. Rosenthal, 2011<\/strong>. Automated interactive video playback for studies of animal communication. J. Vis. Exp., e2374<\/a><\/em><\/li>\n
  23. Y. Wang, J. Yang and R. Cui<\/strong>, 2010<\/strong>. A New Species of Goniurosaurus<\/em> (Squamata: Eublepharidae) from Yingde, Guangdong Province, China. Herpetologica<\/em> 66<\/strong>:229-240.<\/li>\n<\/ol>","protected":false},"excerpt":{"rendered":"

    Google Scholar page. Reprints can be downloaded from my researchgate page at\u00a0https:\/\/www.researchgate.net\/profile\/Rongfeng_Cui\/contributions. Z. Wang, D. Yao, B. Zhao, Y. Shao, F. Li, K-Y Ma, R. Cui*. Effective purging and conservation of heterozygous regions during independent evolution to high-level inbreeding in wild Paradise Fishes. 2025. Molecular Ecology. R. Cui, J. Wu, K. Yan, S. Luo, Y.…<\/p>","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-69","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/lab.raycui.com\/zh\/wp-json\/wp\/v2\/pages\/69","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/lab.raycui.com\/zh\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/lab.raycui.com\/zh\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/lab.raycui.com\/zh\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/lab.raycui.com\/zh\/wp-json\/wp\/v2\/comments?post=69"}],"version-history":[{"count":9,"href":"http:\/\/lab.raycui.com\/zh\/wp-json\/wp\/v2\/pages\/69\/revisions"}],"predecessor-version":[{"id":257,"href":"http:\/\/lab.raycui.com\/zh\/wp-json\/wp\/v2\/pages\/69\/revisions\/257"}],"wp:attachment":[{"href":"http:\/\/lab.raycui.com\/zh\/wp-json\/wp\/v2\/media?parent=69"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}